CREATIS

Projects

• CreaTools

  CreaTools

  • CreaCLI

    Interoperability for CreaTools

  • creaImageIO

    creaImageIO is a library dedicated to manage and index medical images (many formats supported : DICOM, jpeg, mhd, US, own formats...).

    In particular, it provides a high level widget called Gimmick! (Give me my medical images quick!) which reads standard image formats (jpg,tif,...) and medical ones (mhd,hdr,DICOM) and allows to organize images into different trees (the usual and by default is DICOM tree: patient |_ series |_images) which are stored in SQL databases hence can be retrieved quick. A previewer allows to display the selected files....

• DIRAC Cluster
  • DIRAC Cluster Agent

    Documentation and information about releases can be found in the project wiki.

  • DIRAC Cluster Service

    Documentation and information about releases can be found in the project wiki.

• GASW

  Generic Application Service Wrapper (GASW)

  Documentation and information about releases can be found in the Project Wiki.

  • GASW Executor Plugin: AHE

    This plugin enables GASW to execute jobs on AHE platform.

  • GASW Executor Plugin: DIRAC

    This plugin enables GASW to execute jobs on DIRAC platform (http://diracgrid.org).

    Documentation and information about releases can be found in the Project Wiki.

    • DIRAC Minor Status Service

      DIRAC Service to provide information on the fly about jobs.

      Documentation and information about releases can be found in the project wiki.

  • GASW Executor Plugin: gLite

    This plugin enables GASW to execute jobs on gLite platform (http://glite.cern.ch).

    Documentation and information about releases can be found in the Project Wiki.

  • GASW Executor Plugin: Local

    This plugin enables GASW to execute jobs on the local server.

    Documentation and information about releases can be found in the Project Wiki.

• GATE

  Bug Tracker for GATE : http://www.opengatecollaboration.org

• Gate Lab

  

  Portal in production:
  https://gatelab.creatis.insa-lyon.fr

  • GATE workflow

    Include wrapper scripts for gate and merge and gwendia document(s)

• GRIDA

  
  Grid Data Management Agent
  GRIDA is a LCG data management agent to handle file catalog and transfer operations by pooling users requests.
  Documentation and information about releases can be found in the Project Wiki....

• RTK
• SHIWA

  

  Software and workflow development for the SHIWA project.

  • Application porting
    • GATE porting in SHIWA
    • SIMRI porting
  • SHIWA pool

    Pool workflow executor

  • SHIWA proxy manager

    Proxy manager for the SHIWA SSP.

• Virtual Imaging Platform

  The Virtual Imaging Platform (VIP) project targets multi-modality, multi-organ and dynamic (4D) medical image simulation. Integrating proven simulation software of the four main imaging modalities (MRI, US, PET and CT), the platform will cope with interoperability challenges among simulators, will address compatibility issues between organ models and will provide transparent access to computing and storage resources....

  • MOTEUR web service
  • Portal

    Portal in production:
    https://vip.creatis.insa-lyon.fr
    Documentation and information about releases can be found in the Project Wiki.

    • Data Manager

      All features enabling users to transfer data from/to the platform. Users can't upload any kind of file to the platform. It will be only workflow inputs or specific files as registered in data classes (e.g. organ models). In the same spirit users can only download workflow results/temp files or specific objects....

      • Data Manager - Applet
    • Model interface

      interface enabling the use of models in the platform

    • Moteur2 Workflows DB Plugin

      The Workflows DB plugin provides workflows information, such as status, inputs, outputs and processors in a database.
      Currently the plugin provides support to Apache Derby and MySQL databases.

      Documentation and information about releases can be found in the project wiki....

    • Provenance interface
    • Simulation interface

      Interface to define a simulation scene + parameters and launch it.

    • Social

      Social network application for VIP to provide communication and sharing among users.
      Documentation and information about releases can be found in the project wiki.

• VV

  VV is an open-source and cross platform image viewer, designed for fast and simple visualization of spatio-temporal images: 2D, 2D+t, 3D and 3D+t (or 4D) images. It is more specifically designed for qualitative evaluation of image registration and deformation field visualization. It also contains several tools for comparing images using transparency or fusion, visualizing vector fields and defining landmarks. With a modern graphic card, navigation is fast and smooth....

• DWI
• DynIncrCheck

  A set of bash functions implementing dynamic load balancing, incremental merge and checkpointing.

• FIELD-II workflows
  • FIELD-II core simu workflow

    The core simulation of FIELD-II, as defined in the VIP project

  • FIELD-II object preparation
  • Field-II object&core workflow

    gathering of stand alone object and core workflows in one workflow

• Mean-Shift workflow
• SIMRI workflows
  • SIMRI core simulation
  • SIMRI object preparation
• Sindbad workflows
• Sorteo workflows
  • Sorteo core simulation
• Workflow deployment

  A tool to deploy workflows on the LFC.

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